- Baxter Creek (3,6)
- Bidwell Creek (3 6)
- Butte Creek (3 6)
- Cold Creek (3 6)
- Cow Creek (6)
- Hallet Creek (6)
- Indian Creek (3,6)s
- Long Valley Creek (6)
- Middle Fork Feather River (3,6)
- North Fork Pit River (3,6)
- Oak Creek (6)
- Parker Creek (3 6)
- Pit River in Big Valley (5,6)
- Pit River in Hot Springs Valley (5,7)
- Purisima Creek (6)
– Order Amending 1985 Modified & Amended Decree
– Order Modifying Decree
- Roaring Creek (6)
- San Gregorio Creek (6)
- Scott River (3,6,12)
- Seiad Creek (3,6)
- Shackleford Creek (3,6)
- Shasta River (3,6)
- Soquel Creek (6)
- Stanislaus River: (6)
- Tule Lake Reservoir (Cedar Creek) (5,6)
- West Carson River (4,6,11)
- Whitewater River (6)
- Willow Creek (6)
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- Angle (4,11)
- Ash Creek (3,6)
- Baxter Creek Spring (6)
- Burney Creek (3,6)
- Butte Creek (9)
- Carol Spring (9)
- Cedar Creek (3,6)
- Central Basin (3,8,13)
- Clover Creek (3,6)
- Cottonwood Creek (3,6)
- Cow Creek (Supplemental) (6)
- Davis Creek (3,6)
- Deep Creek (3,6)
- Digger Creek (3,8)
- Dry Creek (6)
- Eagle Creek (3,6)
- Eagle Ravine (9)
- Emerson Creek (3,6)
- Franklin Creek (3,6)
- French Creek (3,6)
- Guejito Creek (9)
- Hat Creek (3,6)
- La Zanja Creek (6)
- Laguna Creek (9)
- Lanes Creek (9)
- Los Alamos Creek (6)
- Lower American River (10)
- Mill Creek (3,6)
- Mill Creek (8)
- Moon Lee Ditch (West Weaver Creek) (9)
- Morrison Creek (9)
- Mountain Spring Gulch (10)
- N.F. Cottonwood Creek (3,6)
- New Pine Creek (3,6)
- North (Little) Cow Creek (3,6)
- Oak Run Creek (3,6)
- Oliver Creek (6)
- Owl Creek (3,6)
- Pine Creek, No7814 (near Alturas) (3,7)
- Pine Creek, No.2343 (3,6)
- Pine Creek, No.3391 (6)
- Rader Creek (3,6)
- Raymond Basin (3,6,13)
- Red Rock Creek (9)
- S.F. Pit River (5,6)
- San Fernando Valley (Upper Los Angeles River) (6,13)
- San Gabriel Valley Basin: (5,8,13)
- San Luis Rey River (9)
- San Pedro Creek (6)
- Santa Ana River (5,6,12)
- Scotts Valley (Lake County) (6,13)
- Shady Creek (6)
- Soldier Creek (3,6)
- South Fork Pit River (5,6)
- Stony Creek (Supplemental) (6,12 )
- Sucker Run (9)
- Susan River (3,6)
- Temecula Creek (Santa Margarita River) (9,11)
- Tia Juana River (9,12)
- Upper San Jacinto Basin (6,13)
- Upper Uvas Creek (6)
- Uvas Creek (6)
- West Coast Basin (3,6,13)
- West Walker River (11)
- Willow Creek (3,8)
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